PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676771820
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 422aa    MW: 47404.1 Da    PI: 8.5873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676771820genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.9e-067597123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C++C++ F r  nL+ H r+H
  676771820 75 YVCEICNQGFQRDQNLQMHRRRH 97
               9*********************9 PP

2zf-C2H213.70.00018154175223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                 C+ C+k +  +s++k H++t+
  676771820 154 ICERCSKGYAVQSDYKAHLKTC 175
                7*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.85E-57298No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57497IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527597IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.977597IPR007087Zinc finger, C2H2
PROSITE patternPS0002807797IPR007087Zinc finger, C2H2
SMARTSM00355160117147IPR015880Zinc finger, C2H2-like
SMARTSM00355110153180IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009630Biological Processgravitropism
GO:0009965Biological Processleaf morphogenesis
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0048444Biological Processfloral organ morphogenesis
GO:2000012Biological Processregulation of auxin polar transport
GO:2000904Biological Processregulation of starch metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MIDYERSNNT KNINHHRNPP PSSSSSDLLP DSNGAAVAQK RKRRPAGTPE KDLAQDPEAE  60
VVSLSPRTLL ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKRETNE EVKKRVYVCP  120
EPTCLHHNPC HALGDLVGIK KHFRRKHSNH KQWICERCSK GYAVQSDYKA HLKTCGTRGH  180
SCDCGRVFSR VESFIEHQDN CTMRRSQPSS HRLQQQQQHT ENATQTASTA KNVDLSVGTV  240
LSGHPLLRQS QPSDQQPSDL LYPFVGSCAT TGSSIELQLL PSRASTDDTS LSLSIGMETT  300
MSSYEMGETS LLLGQREEAR REAKRQIEIA ELEFAEAKRI RQHAKAELHK AQLYREEASR  360
RISATMMQIT CHNCKKHFQT VAASAPPPLP QPPCTDESTS LAVSYVSSAT TEGEKASDRA  420
SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894890.0AC189489.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB084K02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105061.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_009105062.10.0PREDICTED: protein SHOOT GRAVITROPISM 5-like
RefseqXP_013649129.10.0PREDICTED: protein indeterminate-domain 14-like
RefseqXP_013649130.10.0PREDICTED: protein indeterminate-domain 14-like
SwissprotQ9C9X70.0IDD14_ARATH; Protein indeterminate-domain 14
TrEMBLA0A078EZ840.0A0A078EZ84_BRANA; BnaA07g24790D protein
TrEMBLM4CIL60.0M4CIL6_BRARP; Uncharacterized protein
STRINGBra004050.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69328131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.10.0indeterminate(ID)-domain 14